Watch Star Fork

HC.Ji / TarMetRGPL-3.0

加入码云
与超过 300 万 开发者一起发现、参与优秀开源项目,私有仓库也完全免费 :)
免费加入
TarMet is a shiny application for targeted metabolic analyses based on mass spectrometry.
Loading...
README.md 1.52 KB

TarMet

TarMet is a shiny application for targeted metabolic analyses based on mass spectrometry.

Release note

v1.2.0 version is pre-released as the development version (only).

What's new

  1. MS/MS deconvolution for data-independent acquisition datasets.
  2. Custom MS/MS database build by data-dependent acquisition datasets.

In the future

  1. Allow run in command line.
  2. Allow multi isotope tracer, like 13C and 15N.

Installation

Install Depends

First, please install the depends with the following codes

install.packages(c("rcdk", "tidyr", "devtools", "data.table", "enviPat", "Matrix", "shiny", "plotly"))
source("https://bioconductor.org/biocLite.R")
biocLite(c("MassSpecWavelet", "mzR"))

Released version (Suggested)

Download the source package at url and install the package locally.

Development version

Note: Development may include bugs/error and functions not ready.

library(devtools)
install_github("hcji/TarMet")

Usage:

library(TarMet)
runTarMet()

A user guide is included in the package, Here is a gif of how to use the software.

Publication and citation

TarMet: a reactive GUI tool for efficient and confident quantification of MS based targeted metabolic and stable isotope tracer analysis PDF

Contact

For any questions, please contact: ji.hongchao@foxmail.com

项目点评 ( 1 )

你可以在登录后,发表评论

搜索帮助